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 6.500

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Functional Spheroids: Microcavity Arrays, Oxygen Profiling & 3D Mitochondrial Stress Testing

Course Details

  XTech Academy in collaboration with CAVIGEN
  • Location: XTech Academy, BioLabs, Heidelberg, Germany
  • Duration: 6 days
  • Format: Hybrid (2 Online Theory Days + 4 In-Person Laboratory Days)
  • Level: Intermediate (designed for MSc/PhD students, postdocs, and professionals working in cell biology, oncology, or regenerative medicine)

 

Workshop Schedule:

 

  • 2–3 July 2026 (Online) | 6–10 July 2026 (In Person)
  • 5–6 November 2026 (Online) | 9–13 November 2026 (In Person)

Additional information

Overview

Advance your expertise in 3D cell culture with this comprehensive hybrid workshop focusing on reproducible spheroid generation, real-time oxygen monitoring, hypoxia profiling, and functional mitochondrial analysis.

This intensive training program combines two online theory days with four days of hands-on laboratory training, providing participants with a complete workflow from spheroid generation to advanced functional characterization. Using MicroSpheres™, SensoSpheres™, MicrosCube™ oxygen sensing technology, fluorescence microscopy, confocal imaging, and mitochondrial stress testing, participants will gain practical experience with cutting-edge tools increasingly used in pharmaceutical research, cancer biology, toxicology, tissue engineering, and organ-on-chip development.

Unlike conventional 3D culture courses that focus primarily on morphology, this workshop emphasizes the functional biology of spheroids. Participants will learn how oxygen availability shapes cellular behavior, how mitochondrial function can be measured in three-dimensional tissues, and how physiological parameters can be integrated with imaging data to generate biologically meaningful insights.

Throughout the course, participants will design experiments, generate spheroids, perform staining procedures, collect real-time oxygen measurements, conduct mitochondrial stress tests, analyze their own datasets, and discuss how these technologies can be implemented in their own research projects.

Prerequisites

This advanced course is recommended for participants who have:

  • Prior experience with mammalian cell culture
  • Basic understanding of 3D cell culture systems
  • Experience with fluorescence microscopy is beneficial
  • Completion of an introductory 3D Cell Culture course or equivalent experience

Learning Objectives

By the end of this workshop participants will be able to:

  • Generate reproducible spheroids using MicroSphere and SensoSphere platforms
  • Understand the principles of oxygen sensing in 3D cultures
  • Perform live/dead and mitochondrial staining protocols
  • Operate fluorescence and confocal microscopes for spheroid analysis
  • Monitor oxygen dynamics under normoxic, hypoxic and hyperoxic conditions
  • Design and execute 3D mitochondrial stress tests
  • Analyze oxygen consumption profiles and mitochondrial responses
  • Integrate imaging, oxygen sensing and functional assay data
  • Apply these workflows to drug screening, disease modelling and organ-on-chip systems

Online Theory Sessions

Day 1 (Online)

3D Cell Culture Foundations

TimeActivity
9:00 – 9:15Introduction & Course Overview
9:15 – 9:45From 2D Monolayers to 3D Cell Culture
9:45 – 10:30MicroSpheres: Principles & Experimental Design
10:30 – 10:45Coffee Break
10:45 – 11:15Staining Techniques in 3D: Live/Dead and Mitochondrial Probes
11:15 – 11:45Microscopy & Imaging: Principles and Tips
11:45 – 12:15LDH Assay as a Functional Readout in Spheroid Cultures
12:15 – 12:30Q&A Session

Day 2 (Online)

Oxygen in Cell Culture

TimeActivity
9:00 – 9:15Welcome & Questions
9:15 – 9:45Oxygen in 3D Cell Culture: From Hypoxia to Physioxia
9:45 – 10:30Principles of Oxygen Sensing
10:30 – 10:45Coffee Break
10:45 – 11:15Experimental Design for Oxygen Measurement & 3D Mito-Stress Testing
11:15 – 11:45Basic Data Interpretation
11:45 – 12:15Overview of Practical Work & Hands-On Plan
12:15 – 12:30Wrap-Up & Next Steps

Hands-On Laboratory Training

Day 3 (In-Person)

Spheroid Generation & Oxygen Monitoring

TimeActivity
8:00 – 8:30Welcome, Lab Planning & Questions
8:30 – 9:30Introduction to BSL-2 Guidelines
9:30 – 10:30Preparation of MicroSpheres & SensoSpheres; 2D Cell Harvesting and Single-Cell Suspension Preparation
10:30 – 10:45Coffee Break
10:45 – 12:30Completion of Cell Preparation and Parallel Seeding
12:30 – 13:30Lunch Break
13:30 – 14:15Calibration of MicrosCube Systems & Start of 72-Hour Oxygen Monitoring
14:15 – 15:00Introduction to Fluorescence & Confocal Microscopy
15:00 – 15:15Coffee Break
15:15 – 16:00Open Lab & Questions
16:00 – 16:30Daily Wrap-Up & Planning

Day 4 (In-Person)

Imaging, Staining & Early Oxygen Analysis

TimeActivity
9:00 – 9:15Short Recap
9:15 – 9:30First Review of Oxygen Curves
9:30 – 10:00Live/Dead Staining of Trainer-Prepared MicroSphere Spheroids
10:00 – 10:15Coffee Break
10:15 – 12:15Fluorescence & Confocal Imaging
12:15 – 13:15Lunch Break
13:15 – 14:15Brightfield Imaging of Participants’ Own MicroSpheres
14:15 – 14:45Adjustment of Hypoxia/Hyperoxia Conditions
14:45 – 15:00Coffee Break
15:00 – 15:45Optional Imaging or Image Analysis Session
15:45 – 16:15Q&A, Observations & Planning

Day 5 (In-Person)

Hypoxia Profiling & Mito-Stress Experimental Design

TimeActivity
9:00 – 9:15Recap & Planning
9:15 – 10:00Imaging of Participants’ Own MicroSpheres
10:00 – 11:15Hypoxia Staining: Fixation & Primary Antibody Incubation
11:15 – 11:30Coffee Break
11:30 – 12:30Optional Imaging or MitoTracker Staining
12:30 – 13:30Lunch Break
13:30 – 14:00Intermediate Oxygen Curve Analysis
14:00 – 14:45Theory Session: 3D Mito-Stress Test
14:45 – 15:00Coffee Break
15:00 – 15:30Design of Mito-Stress Experiments
15:30 – 16:15Future Outlook: Organoids & Organ-on-Chip Technologies

Day 6 (In-Person)

3D Mitochondrial Stress Testing

TimeActivity
9:00 – 9:15Recap & Planning
9:15 – 9:30Preparation of First Mito-Stress Test
9:30 – 12:00Control 3D Mito-Stress Test
9:45 – 11:45Parallel Hypoxia Staining: Secondary Antibody Incubation
12:00 – 13:00Lunch Break
13:00 – 13:30Preparation of Second Mito-Stress Test
13:30 – 16:00Substance/Inhibitor-Based 3D Mito-Stress Test
13:45 – 15:45Parallel Fluorescence & Confocal Imaging of Hypoxia-Stained Samples
16:00 – 16:30Joint Discussion & Preliminary Data Review

What Participants Will Gain

  • Reproducible spheroid generation using advanced microcavity systems
  • Live/dead and mitochondrial staining techniques
  • Fluorescence and confocal microscopy skills
  • Real-time oxygen monitoring and analysis
  • Understanding of hypoxia, normoxia and physioxia in 3D cultures
  • Functional mitochondrial stress testing workflows
  • Advanced data analysis and interpretation strategies
  • Practical experience with technologies used in modern drug development
  • Insights into organoid and organ-on-chip applications

Course Format

Format: Hybrid (2 Online Theory Days + 4 In-Person Laboratory Days)

Location: Heidelberg, Germany

Class Size: 4–6 Participants

Training Style: Intensive Hands-On Workshop

Certificate: XTech Academy Certificate of Completion

Recommended Background: Prior experience in mammalian cell culture and basic 3D spheroid culture systems.

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